Genetic diversity among Brazilian okra landraces detected by morphoagronomic and molecular descriptors

  • Luana Rainieri Massucato Universidade Estadual de Londrina
  • Karina Kazue Nakamura Universidade Estadual de Londrina
  • Paulo Mauricio Ruas Universidade Estadual de Londrina
  • Douglas Mariani Zefa Universidade Estadual de Maringá
  • Derly José Henrique da Silva Universidade Federal de Viçosa
  • Leandro Simões Azeredo Gonçalves Universidade Estadual de Londrina https://orcid.org/0000-0003-2057-0943
Keywords: Genetic variability, molecular markers, phenotype, Bayesian analysis.

Abstract

The conservation of okra landraces [Abelmoschus esculentus (L.) Moench] in gene banks is essential for the success of their use in breeding programmes. This study evaluated the genetic diversity among okra landraces in Brazil based on morphoagronomic descriptors and AFLP markers. We studied 30 accessions of the vegetable gene bank of the Universidade Federal de Viçosa. To this end, 17 morphoagronomic descriptors and five combinations of AFLP primers were used. Genetic parameters were estimated for the quantitative traits and the accessions were grouped by Ward’s method, using the Gower’s and Jaccard’s distance measures, respectively, for the morphoagronomic and molecular data. Polymorphisms were observed for all qualitative traits, while the quantitative traits were significant by deviance analysis. The genetic parameters confirmed the existence of variability among accessions, and high accuracy and heritability indices were found for the traits related to fruit and plant height. Ward’s grouping showed no relationship between the clusters formed with the morphoagronomic and molecular data and the geographical origin of the accessions. No association between morphoagronomic descriptors and AFLP markers was observed. The lack of correlation suggests that both approaches of characterization are important to understand and differentiate the okra accessions.

Downloads

Download data is not yet available.

References

Akash, M. W., Shiyab, S. M., & Saleh, M. I. (2013). Yield and AFLP analyses of inter-landrace variability in okra (Abelmoschus esculentus L.). Life Science Journal, 10(2), 2771-2779.

Asare, A. T., Asare-Bediako, E., Agyarko, F., Taah, K., & Osei, E. O. (2016). Phenotypic traits detect genetic variability in Okra (Abelmoschus esculentus. L. Moench). African Journal of Agricultural Research, 11(33), 3169-3177. DOI: 10.5897/AJAR2016.11160

Baba, V. Y., Rocha, K. R., Gomes, G. P., de Fátima Ruas, C., Ruas, P. M., Rodrigues, R., & Gonçalves, L. S. A. (2016). Genetic diversity of Capsicum chinense accessions based on fruit morphological characterization and AFLP markers. Genetic Resources and Crop Evolution, 63(8), 1371-1381. DOI: 10.1007/s10722-015-0325-4

Das, S., Chattopadhyay, A., Chattopadhyay, S. B., Dutta, S., & Hazra, P. (2012). Genetic parameters and path analysis of yield and its components in okra at different sowing dates in the Gangetic plains of eastern India. African Journal of Biotechnology, 11(95), 16132-16141. DOI: 10.5897/AJB12.545

Düzyaman, E. (2005). Phenotypic diversity within a collection of distinct okra (Abelmoschus esculentus) cultivars derived from Turkish land races. Genetic Resources and Crop Evolution, 52(8), 1019-1030. DOI: 10.1007/s10722-004-6118-9

Cruz, C. D. (2016). Genes Software-extended and integrated with the R, Matlab and Selegen. Acta Scientiarum. Agronomy, 38(4), 547-552. DOI: 10.4025/actasciagron.v38i4.32629

Evanno, G., Regnaut, S., & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular ecology, 14(8), 2611-2620. DOI: 10.1111/j.1365-294X.2005.02553.x

Earl, D. A., & von Holdt, B. M. (2012). STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation genetics resources, 4(2), 359-361. DOI: 10.1007/s12686-011-9548-7

Falconer, D. S., & Mackay, T. F. C. (1996). Introduction to quantitative genetics. Edinburgh, SC: Addison Wesley Longman.

Gulsen, O., Karagul, S., & Abak, K. (2007). Diversity and relationships among Turkish okra germplasm by SRAP and phenotypic marker polymorphism. Biologia, 62(1), 41-45. DOI: 10.2478/s11756-007-0010-y

Gemede, H. F., Ratta, N., Haki, G. D., Woldegiorgis, A. Z., & Beyene, F. (2015). Nutritional quality and health benefits of okra (Abelmoschus esculentus): a review. Journal Food Process Technology, 6(458), 1-6. DOI: 10.4172/2157-7110.1000458

Gower, J. C. (1971). A general coefficient of similarity and some of its properties. Biometrics 27(4), 857–871. DOI: 10.2307/2528823

Henderson, C. R. (1984). Applications of linear models in animal breeding. Guelph: University of Guelph Google Scholar.

Hughes, J. (2009). Just famine foods? What contributions can underutilized plants make to food security?. Acta Horticulturae, 806(1), 39-48. DOI: 10.17660/ActaHortic.2009.806.2

Ibrahim, E. A. A., Abed, M. Y., & Moghazy, A. M. (2013). Genetic Behavior of Families Selected from Some Local Okra (Abelmoschus esculentus L. Moench) Populations in Egypt. Plant Breeding and Biotechnology, 1(4), 396-405. DOI: 10.9787/PBB.2013.1.4.396

International Plant Genetic Resources Institute - IPGRI (1991). Okra descriptor, diversity for development. International Plant Genetic Resource Institute, Rome, Italy.

Kamalesh, P., Subrata, D., Asraf, A. K., & Pranabesh, C. (2016). Phytochemical investigation and hypoglycaemic effect of Abelmoschus esculentus. Research Journal of Pharmacy and Technology, 9(2), 162–164. DOI: 10.5958/0974-360X.2016.00028.7

Kumar, S., Parekh, M. J., Fougat, R. S., Patel, S. K., Patel, C. B., Kumar, M., & Patel, B. R. (2017a). Assessment of genetic diversity among okra genotypes using SSR markers. Journal of Plant Biochemistry and Biotechnology, 26(2), 172-178. DOI: 10.1007/s13562-016-0378-2

Kumar, M., Sharma, V. R., Kumar, N., Sirohi, U., Naresh, R. K., & Chaudhary, V. (2017b). Screening of Microsatellite Markers for Genetic Diversity Assessment and Conservation of Germplasm in Okra (Abelmoschus esculentus L. Moench). International Journal of Current Microbiology and Applied Scinces, 6(6), 509-520. DOI: 10.20546/ijcmas.2017.606.060

Kyriakopoulou, O. G., Arens, P., Pelgrom, K. T., Karapanos, I., Bebeli, P., & Passam, H. C. (2014). Genetic and morphological diversity of okra (Abelmoschus esculentus [L.] Moench.) genotypes and their possible relationships, with particular reference to Greek landraces. Scientia Horticulturae, 171(1), 58-70. DOI: 10.1016/j.scienta.2014.03.029

Martinello, G. E., Leal, N. R., Amaral Júnior, A. T. D., Pereira, M. G., & Daher, R. F. (2003). Genetic diversity in okra using RAPD markers. Horticultura Brasileira, 21(1), 20-25. DOI: 10.1590/S0102-05362003000100004

Moulin, M. M., Rodrigues, R., Gonçalves, L. S., Sudré, C. P., dos Santos, M. H., & da Silva, J. R. P. (2012). Collection and morphological characterization of sweet potato landraces in north of Rio de Janeiro state. Horticultura Brasileira, 30(2), 286-292. DOI: 10.1590/S0102-05362012000200017

Patil, P., Sutar, S., Joseph, J. K., Malik, S., Rao, S., Yadav, S., & Bhat, K. V. (2015). A systematic review of the genus Abelmoschus (Malvaceae). Rheedea, 25(1), 14-30.

Petropoulos, S., Fernandes, Â., Barros, L., & Ferreira, I. C. (2018). Chemical composition, nutritional value and antioxidant properties of Mediterranean okra genotypes in relation to harvest stage. Food Chemistry, 242, 466-474. DOI: 10.1016/j.foodchem.2017.09.082

Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155(2), 945-959.

Ramasamy, R. K., Ramasamy, S., Bindroo, B. B., & Naik, V. G. (2014). STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface. SpringerPlus, 3(1), 431. DOI: 10.1186/2193-1801-3-431

Ramgiry, M., & Singh, S. (2017). Genetic divergence analysis in okra (Abelmoschus esculentus (L.) Moench). International Journal of Pure & Applied Bioscience, 5(2), 981-986. DOI: 10.18782/2320-7051.2753

Rashwan, A. M. A. (2011). Study of genotypic and phenotypic correlation for some agro-economic traits in okra (Abelmoschus esculentus (L.) Moench). Asian Journal of Crop Science, 3(2), 85-91. DOI: 10.3923/ajcs.2011.85.91

Reddy, M. T., Haribabu, K., Ganesh, M., & Chandrasekhar, K. (2012). Genetic divergence analysis of indigenous and exotic collections of okra (Abelmoschus esculentus (L.) Moench). Journal of Agricultural Technology, 8(2), 611-623.

Resende, M. D. V. D. (2016). Software Selegen-REML/BLUP: a useful tool for plant breeding. Crop Breeding and Applied Biotechnology, 16(4), 330-339. DOI: 10.1590/1984-70332016v16n4a49

Saifullah, M., Rabbani, M. G., & Garvey, E. J. (2010). Estimation of genetic diversity of okra (Abelmoschus esculentus L. Moench) using RAPD markers. SAARC Journal of Agriculture, 8(2), 19-28.

Santos, M. H. D., Rodrigues, R., Gonçalves, L. S. A., Sudré, C. P., & Pereira, M. G. (2012). Agrobiodiversity in Cucurbita spp. landraces collected in Rio de Janeiro assessed by molecular markers. Crop Breeding and Applied Biotechnology, 12(2), 96-103. DOI: 10.1590/S1984-70332012000200001

Schafleitner, R., Kumar, S., Lin, C. Y., Hegde, S. G., & Ebert, A. (2013). The okra (Abelmoschus esculentus) transcriptome as a source for gene sequence information and molecular markers for diversity analysis. Gene, 517(1), 27-36. DOI: 10.1016/j.gene.2012.12.098

Silva, D. J. H., Moura, M. C. C. L., & Casali, V. W. D. (2001). Recursos genéticos do banco de germoplasma de hortaliças da UFV: histórico e expedições de coleta. Horticultura Brasileira, 19(2), 108-114. DOI: 10.1590/S0102-05362001000200002

Singh, D. (1981). The relative importance of characters affecting genetic divergence. Indian Journal of Genetics and Plant Breeding (The), 41(2), 237-245.

Vos, P., Hogers, R., Bleeker, M., Reijans, M., Lee, T. V. D., Hornes, M., ... Zabeau, M. (1995). AFLP: a new technique for DNA fingerprinting. Nucleic acids research, 23(21), 4407-4414. DOI: 10.1093/nar/23.21.4407

Zhang, Z., van Parijs, F. R., & Xiao, B. (2014). The status of AFLP in the genomics era and a pipeline for converting AFLPs into single-locus markers. Molecular breeding, 34(3), 1245-1260. DOI: 10.1007/s11032-014-0113-4

Yıldız, M., Ekbiç, E., Düzyaman, E., Serçe, S., & Abak, K. (2016). Genetic and phenotypic variation of Turkish Okra (Abelmoschus esculentus). Journal of plant biochemistry and biotechnology, 25(3), 234-244. DOI: 10.1007/s13562-015-0330-x

Yonas, M., Garedew, W., & Debela, A. (2014). Multivariate analysis among okra (Abelmoschus esculentus (l.) moench) collection in South Western Ethiopia. Journal of Plant Sciences, 9(2), 43. DOI: 10.3923/jps.2014.43.50

Yuan, C. Y., Zhang, C., Wang, P., Hu, S., Chang, H. P., Xiao, W. J., ... Guo, X. H. (2014). Genetic diversity analysis of okra (Abelmoschus esculentus L.) by inter-simple sequence repeat (ISSR) markers. Genetics and Molecular Research, 13(2), 3165-3175. DOI: 10.4238/2014.April.25.1

Published
2019-09-20
How to Cite
Massucato, L. R., Nakamura, K. K., Ruas, P. M., Zefa, D. M., Silva, D. J. H. da, & Gonçalves, L. S. A. (2019). Genetic diversity among Brazilian okra landraces detected by morphoagronomic and molecular descriptors. Acta Scientiarum. Agronomy, 42(1), e43426. https://doi.org/10.4025/actasciagron.v42i1.43426
Section
Genetics and Plant Breeding

 

2.0
2019CiteScore
 
 
60th percentile
Powered by  Scopus

 

2.0
2019CiteScore
 
 
60th percentile
Powered by  Scopus